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Abbrev SMD  +
Address Department of Genetics  +, Stanford University School of Medicine  +, CA 94305  +, USA.  +
Availability Public +, Open-source license +, The community can contribute to this resource +, Acknowledgement requested +
Comment org-id: smd_stanford
CurationStatus curated  +
DefiningCitation  +
Definition Database to store, annotate, view, analyze Database to store, annotate, view, analyze and share microarray data. In addition to providing registered users access to their own data, SMD also provides access to public data, and tools with which to analyze those data, to any public user anywhere in the world. Previously, the addition of new microarray data analysis tools to SMD has been limited by available engineering resources, and in addition, the existing suite of tools did not provide a simple way to design, execute and share analysis pipelines, or to document such pipelines for the purposes of publication. To address this, they have incorporated the GenePattern software package directly into SMD, providing access to many new analysis tools, as well as a plug-in architecture that allows users to directly integrate and share additional tools through SMD. This extension is available with the SMD source code that is fully and freely available to others under an Open Source license, enabling other groups to create a local installation of SMD with an enriched data analysis capability. SMD search options allow the user to Search By Experiments, Search By Datasets, or Search By Gene Names. Web services are provided using common standards, such as Simple Object Access Protocol (SOAP). This enables both local and remote researchers to connect to an installation of the database and retrieve data using pre-defined methods, without needing to resort to use of a web browser. needing to resort to use of a web browser.
ExampleImage SMD.PNG +
Grant Category:R01 HG003469   +
Has default formThis property is a special property in this wiki. Resource  +
Has role Database +, Data repository +, Data analysis service +, Source code +, Web service +
Id nlx_94141  +
Is part of Princeton University; New Jersey; USA +
Keywords Data set +, Microarray +, Gene +, Image +
Label Resource:SMD  +
Modification dateThis property is a special property in this wiki. 27 March 2014 17:47:04  +
ModifiedDate 27 March 2014  +
PMID 18953035, 17182626, 15608265, 12519956, 11125075  +
Page has default formThis property is a special property in this wiki. Resource  +
RelatedTo Resource:3DVC +, Resource:OMICtools +
SuperCategory Resource  +
Supporting Agency National Human Genome Research Institute +, National Cancer Institute +, Howard Hughes Medical Institute +, Stanford University School of Medicine; California; USA +
Synonym Stanford Microarray Database  +
Categories Resource
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Resource:SOURCE + Is part of
Resource:Longhorn Array Database + RelatedTo


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