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From NeuroLex
| Abbrev
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SMD +
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| Address
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Department of Genetics +,
Stanford University School of Medicine +,
CA 94305 +,
USA. +
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| Availability
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Public +,
The community can contribute to this resource. +,
Open-source license +
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| Comment
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org-id: smd_stanford
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| CurationStatus
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curated +
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| DefiningCitation
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http://smd.stanford.edu/ +
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| Definition
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Database to store, annotate, view, analyze … Database to store, annotate, view, analyze and share microarray data. In addition to providing registered users access to their own data, SMD also provides access to public data, and tools with which to analyze those data, to any public user anywhere in the world.
Previously, the addition of new microarray data analysis tools to SMD has been limited by available engineering resources, and in addition, the existing suite of tools did not provide a simple way to design, execute and share analysis pipelines, or to document such pipelines for the purposes of publication. To address this, they have incorporated the GenePattern software package directly into SMD, providing access to many new analysis tools, as well as a plug-in architecture that allows users to directly integrate and share additional tools through SMD. This extension is available with the SMD source code that is fully and freely available to others under an Open Source license, enabling other groups to create a local installation of SMD with an enriched data analysis capability.
SMD search options allow the user to Search By Experiments, Search By Datasets, or Search By Gene Names.
Web services are provided using common standards, such as Simple Object Access Protocol (SOAP). This enables both local and remote researchers to connect to an installation of the database and retrieve data using pre-defined methods, without needing to resort to use of a web browser. needing to resort to use of a web browser.
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| EditorialNote
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*Note: According to the website on 5-6-13, the SMD is being moved to Princeton University and will be down until further notice.
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| ExampleImage
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SMD.PNG +
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| Grant
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Category:R01 HG003469 +
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| Has default formThis property is a special property in this wiki.
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Resource +
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| Has role
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Database +,
Data repository +,
Data analysis service +,
Source code +,
Web service +
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| Id
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nlx_94141 +
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| Is part of
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Stanford University School of Medicine; California; USA +
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| Keywords
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Data set +,
Microarray +,
Gene +
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| Label
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Resource:SMD +
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| Modification dateThis property is a special property in this wiki.
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14 May 2013 19:01:10 +
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| ModifiedDate
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14 May 2013 +
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| PMID
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18953035, 17182626, 15608265, 12519956, 11125075 +
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| Page has default formThis property is a special property in this wiki.
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Resource +
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| RelatedTo
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Resource:3DVC +
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| SuperCategory
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Resource +
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| Supporting Agency
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National Human Genome Research Institute +,
National Cancer Institute +,
Howard hughes medical institute +,
Stanford University School of Medicine; California; USA +
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| Synonym
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Stanford Microarray Database +
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| Categories |
Resource
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