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Category:Resource:SMD
Abbrev SMD  +
Address Department of Genetics  +, Stanford University School of Medicine  +, CA 94305  +, USA.  +
Availability Public +, Open-source license +, The community can contribute to this resource +, Acknowledgement requested +
Comment org-id: smd_stanford Access: Open/Closed <br /> Start date: 2011 <br /> Type: Disciplinary <br /> (info provided by re3data.org)
CurationStatus curated  +
DefiningCitation http://smd.princeton.edu/  +
Definition Database to store, annotate, view, analyze Database to store, annotate, view, analyze and share microarray data. It provides registered users access to their own data, provides users access to public data, and tools with which to analyze those data, to any public user anywhere in the world. The GenePattern software package has been incorporated directly into SMD, providing access to many new analysis tools, as well as a plug-in architecture that allows users to directly integrate and share additional tools through SMD. This extension is available with the SMD source code that is fully and freely available to others under an Open Source license, enabling other groups to create a local installation of SMD with an enriched data analysis capability. SMD search options allow the user to Search By Experiments, Search By Datasets, or Search By Gene Names. Web services are provided using common standards, such as Simple Object Access Protocol (SOAP). This enables both local and remote researchers to connect to an installation of the database and retrieve data using pre-defined methods, without needing to resort to use of a web browser. needing to resort to use of a web browser.
ExampleImage SMD.PNG +
Grant Category:R01 HG003469   +
Has default formThis property is a special property in this wiki. Resource  +
Has role Database +, Data repository +, Data analysis service +
Id nlx_94141  +
Is part of Princeton University; New Jersey; USA +
Keywords Data set +, Microarray +, Gene +, Image +, Gene expression +, Adenovirus disease +, Apoptosis +, Leukemia +, Source code +, Web service +
Label Resource:SMD  +
Listedby Resource:3DVC +, Resource:re3data.org +, Resource:OMICtools +
Modification dateThis property is a special property in this wiki. 20 December 2014 07:34:53  +
ModifiedDate 20 December 2014  +
OldURL http://genome-www.stanford.edu/microarray/  +, http://smd.stanford.edu/  +
PMID 18953035, 17182626, 15608265, 12519956, 11125075  +
Page has default formThis property is a special property in this wiki. Resource  +
SuperCategory Resource  +
Supporting Agency National Human Genome Research Institute +, National Cancer Institute +, Howard Hughes Medical Institute +, Stanford University School of Medicine; California; USA +
Synonym Stanford Microarray Database  +
Xref OMICS_00870  +
Categories Resource
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Resource:SOURCE + Is part of
Resource:Longhorn Array Database +, Resource:Tuberculosis Database + RelatedTo
 

 

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*Note: Neurolex imports many terms and their ids from existing community ontologies, e.g., the Gene Ontology. Neurolex, however, is a dynamic site and any content beyond the identifier should not be presumed to reflect the content or views of the source ontology. Users should consult with the authoritative source for each ontology for current information.