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Category:Resource:ASPGD
Abbrev ASPGD, ASPGD LOCUS, ASPGD REF  +
AltURL http://www.aspergillusgenome.org/  +
Availability Free +, Public +
CurationStatus curated  +
DefiningCitation http://www.aspgd.org/  +
Definition Database of genetic and molecular biologic Database of genetic and molecular biological information about the filamentous fungi of the genus Aspergillus including information about genes and proteins of Aspergillus nidulans and Aspergillus fumigatus; descriptions and classifications of their biological roles, molecular functions, and subcellular localizations; gene, protein, and chromosome sequence information; tools for analysis and comparison of sequences; and links to literature information; as well as a multispecies comparative genomics browser tool (Sybil) for exploration of orthology and synteny across multiple sequenced Sgenus species. Also available are Gene Ontology (GO) and community resources. Based on the Candida Genome Database, the Aspergillus Genome Database is a resource for genomic sequence data and gene and protein information for Aspergilli. Among its many species, the genus contains an excellent model organism (A. nidulans, or its teleomorph Emericella nidulans), an important pathogen of the immunocompromised (A. fumigatus), an agriculturally important toxin producer (A. flavus), and two species used in industrial processes (A. niger and A. oryzae). Search options allow you to:<br /> *Search AspGD database using keywords.<br /> *Find chromosomal features that match specific properties or annotations.<br /> *Find AspGD web pages using keywords located on the page.<br /> *Find information on one gene from many databases.<br /> *Search for keywords related to a phenotype (e.g., "conidiation"), an allele (such as veA1), or an experimental condition (e.g., "light").<br /> Analysis and Tools allow you to:<br /> *Find similarities between a sequence of interest and Aspergillus DNA or protein sequences.<br /> *Display and analyze an Aspergillus sequence (or other sequence) in many ways.<br /> *Navigate the chromosomes set. View nucleotide and protein sequence.<br /> *Find short DNA/protein sequence matches in Aspergillus.<br /> *Design sequencing and PCR primers for Aspergillus or other input sequences.<br /> *Display the restriction map for a Aspergillus or other input sequence.<br /> *Find similarities between a sequence of interest and fungal nucleotide or protein sequences.<br /> AspGD welcomes data submissions.<br /> pGD welcomes data submissions.<br />
ExampleImage AspGD.PNG +
Grant Category:R01 AI077599   +
Has default formThis property is a special property in this wiki. Resource  +
Has role Database +, Data repository +
Id nif-0000-12244  +
Is part of Stanford University School of Medicine; California; USA +, Resource:Broad Institute +
Keywords Function +, Gene +, Gene name +, Annotation +, Aspergillus +, Aspergillus nidulans +, Chromosome +, Community +, DNA +, Genome +, Genomic +, Localization +, Orthology +, Phenotype +, Protein +, Protein-coding genes +, S. cerevisiae +, Sequence +, Allele +, Data analysis service +
Label Resource:ASPGD  +
Modification dateThis property is a special property in this wiki. 20 December 2014 02:52:02  +
ModifiedDate 20 December 2014  +
PMID 19773420  +
Page has default formThis property is a special property in this wiki. Resource  +
RelatedTo Resource:Candida Genome Database Resource:Gene Ontology - AmiGO +
Species Aspergillus +
SuperCategory Resource  +
Supporting Agency National Institute of Allergy and Infectious Diseases +
Synonym Aspergillus Genome Database  +
Usedby Resource:NIF Data Federation +
Categories Resource
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*Note: Neurolex imports many terms and their ids from existing community ontologies, e.g., the Gene Ontology. Neurolex, however, is a dynamic site and any content beyond the identifier should not be presumed to reflect the content or views of the source ontology. Users should consult with the authoritative source for each ontology for current information.