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Category:Resource:Affinity Databases for Protein-Ligand Complexes
CurationStatus uncurated  +
DefiningCitation  +
Definition A database that contains affinity data for A database that contains affinity data for protein-ligand complexes of the Protein Data Bank (PDB) in order to provide direct and free access to the experimental affinity of a given complex structure. As of Friday, April 22nd, 2011, AffinDB contains 748 affinity values covering 474 different PDB complexes. More than one affinity value may be associated with a single PDB complex, which is most frequently due to multiple references reporting affinity data for the same complex. Database users are encouraged to notify the administrators about any valuable publication which reports affinity data for PDB complexes. Affinity data are exclusively obtained from the scientific literature. Both 'primary' and 'secondary' references are taken into account:<br /> * A primary reference is a paper describing the original work of affinity measurement for the corresponding protein-ligand complex.<br /> * A secondary reference is any other paper that reports an affinity value for a PDB complex; common examples are publications which include compilations of affinity data for a specific purpose.<br /> AffinDB provides access to data in three different forms:<br /> I. Summary information for PDB entry<br /> II. Affinity information window<br /> III. Tabular reports<br /> br /> III. Tabular reports<br />
Has default formThis property is a special property in this wiki. Resource  +
Has role Database +
Id nif-0000-02536  +
Is part of Philipps-University Marburg; Marburg; Germany +
Keywords Metabolic pathway +, Signaling pathway +, Protein-ligand complex +, Protein-protein interaction +
Label Resource:Affinity Databases for Protein-Ligand Complexes  +
Modification dateThis property is a special property in this wiki. 13 February 2013 23:44:35  +
ModifiedDate 13 February 2013  +
PMID 16381925  +
Page has default formThis property is a special property in this wiki. Resource  +
RelatedTo Resource:Protein Data Bank Site +
SuperCategory Resource  +
Synonym AffinDB  +, AffinDB: Affinity Databases for Protein-Ligand Complexes  +
Categories Resource
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