arrow

From NeuroLex

Jump to: navigation, search
Category:Resource:Alignable Tight Genomic Cluster
Abbrev ATGC  +
CurationStatus curated  +
DefiningCitation http://atgc.lbl.gov/atgc/  +
Definition <br /> ATGC stands for Alignable Ti <br /> ATGC stands for Alignable Tight Genomic Cluster, which is cluster of closely related prokaryotic genomes. ATGC is the principal notion of this web resource.<br /> The purpose of this web resource is to prepare ATGC-derived data sets for a variety of research projects in functional and evolutionary genomics.<br /> Unique features of ATGC include:<br /> * Reliable identification of orthologs (high degree of similarity between the genomes in the set allow an extensive use of synteny in ortholog identification);<br /> * Fine granularity of protein classification (in comparisons of more distant genomes, proteins belonging to families of paralogs are often lumped into a singlegroup; under the ATGC approach, comparison of genomic sequences from highly similar genomes allows one to track each set of orthologs separately);<br /> * Relative rarity of changes of any kind (in sequence, genome organization and gene content) allows the use of parsimony-related methods of analysis.<br /> y-related methods of analysis.<br />
Grant Category:DE-AC02-05CH11231   +
Has default formThis property is a special property in this wiki. Resource  +
Has role Database +
Id nif-0000-02581  +
Is part of Lawrence Berkeley National Laboratory +
Keywords Gene +, Genomic cluster +, Genomic sequence +, Ortholog +, Paralog +, Prokaryotic genomic +, Protein +, Protein classification +
Label Resource:Alignable Tight Genomic Cluster  +
Modification dateThis property is a special property in this wiki. 3 July 2013 22:33:44  +
ModifiedDate 3 July 2013  +
Page has default formThis property is a special property in this wiki. Resource  +
SuperCategory Resource  +
Supporting Agency Department of Energy Joint Genome Institute +, National Library of Medicine +, United States Department of Energy +
Categories Resource
hide properties that link here 
  No properties link to this page.
 

 

Enter the name of the page to start browsing from.

*Note: Neurolex imports many terms and their ids from existing community ontologies, e.g., the Gene Ontology. Neurolex, however, is a dynamic site and any content beyond the identifier should not be presumed to reflect the content or views of the source ontology. Users should consult with the authoritative source for each ontology for current information.