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Category:Resource:Alignable Tight Genomic Cluster
Abbrev ATGC  +
CurationStatus curated  +
DefiningCitation http://atgc.lbl.gov/atgc/  +
Definition <br /> ATGC stands for Alignable Ti <br /> ATGC stands for Alignable Tight Genomic Cluster, which is cluster of closely related prokaryotic genomes. ATGC is the principal notion of this web resource.<br /> The purpose of this web resource is to prepare ATGC-derived data sets for a variety of research projects in functional and evolutionary genomics.<br /> Unique features of ATGC include:<br /> * Reliable identification of orthologs (high degree of similarity between the genomes in the set allow an extensive use of synteny in ortholog identification);<br /> * Fine granularity of protein classification (in comparisons of more distant genomes, proteins belonging to families of paralogs are often lumped into a singlegroup; under the ATGC approach, comparison of genomic sequences from highly similar genomes allows one to track each set of orthologs separately);<br /> * Relative rarity of changes of any kind (in sequence, genome organization and gene content) allows the use of parsimony-related methods of analysis.<br /> y-related methods of analysis.<br />
Grant Category:DE-AC02-05CH11231   +
Has default formThis property is a special property in this wiki. Resource  +
Has role Database +
Id nif-0000-02581  +
Is part of Lawrence Berkeley National Laboratory +
Keywords Gene +, Genomic cluster +, Genomic sequence +, Ortholog +, Paralog +, Prokaryotic genomic +, Protein +, Protein classification +
Label Resource:Alignable Tight Genomic Cluster  +
Modification dateThis property is a special property in this wiki. 3 July 2013 22:33:44  +
ModifiedDate 3 July 2013  +
Page has default formThis property is a special property in this wiki. Resource  +
SuperCategory Resource  +
Supporting Agency Department of Energy Joint Genome Institute +, National Library of Medicine +, United States Department of Energy +
Categories Resource
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