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Category:Resource:Animal Toxin Database
Abbrev ATDB  +
Address College of Life Sciences  +, Hunan Normal University  +, ChangSha  +, South LuShan road 14#  +
Availability Free +, For Public +, Non-Profits +, Academic Institutions +, And Private Individuals using the GNU General Public License +, The community can contribute to this resource +
CurationStatus curated  +
DefiningCitation  +
Definition Database of animal toxins, this most recen Database of animal toxins, this most recent release (2009) focused on constructing a global-scale animal toxin-channel interaction network based on literature and database annotations through the integration of an ion channel database into ATDB 2.0. Most ion channel sequences were categorized and annotated with a hierarchic controlled term system (Ion Channel Ontology). More than 55,022 possible T-C interactions were extracted by text mining which link the toxin and ion channel database. These interaction data were classified carefully based on evidence type, in which 9,193 high confidence interactions were annotated in active site level. A web-based T-C interaction network view was build to visualize and make data access easy. The features and updates of ATDB 2.0 are summarized as follows:<br /> # AN interaction dataset including 55,022 toxin-channel interactions <br /> # Ion channel database (5,097 entries)<br /> # Ontology for ion channel classification (Ion Channel Ontology)<br /> # 3000 maps for toxins and ion channels interaction<br /> # More than 600 additional toxin entries<br /> # PDB view to visualize 3-D structure of molecule<br /> # More flexible option for data downloads.<br /> You may submit new toxins to the database. You may submit new toxins to the database.
Grant Category:30430170   +, Category:30670640   +, Category:30770437   +, Category:2010CB529800   +
Has default formThis property is a special property in this wiki. Resource  +
Has role Database +, Ontology +, Data repository +
Id nlx_62001  +
Is part of Hunan Normal University; Changsha; China +
Keywords Toxin +, Ion channel +, Interaction +, BLAST +, Ligand +, 3D structure +, Data analysis service +
Label Resource:Animal Toxin Database  +
Modification dateThis property is a special property in this wiki. 2 February 2015 04:12:12  +
ModifiedDate 2 February 2015  +
PMID 17933766, 20685369  +
Page has default formThis property is a special property in this wiki. Resource  +
Species Animal +
SuperCategory Resource  +
Supporting Agency National Natural Science Foundation of China +, 973 Program +, Peking University; Beijing; China +, National Laboratory of Protein Engineering and Plant Genetic Engineering +
Categories Resource
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*Note: Neurolex imports many terms and their ids from existing community ontologies, e.g., the Gene Ontology. Neurolex, however, is a dynamic site and any content beyond the identifier should not be presumed to reflect the content or views of the source ontology. Users should consult with the authoritative source for each ontology for current information.