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Category:Resource:ApiDB PlasmoDB
Abbrev PlasmoDB, ApiDB PlasmoDB  +
CurationStatus uncurated  +
DefiningCitation  +
Definition PlasmoDB is a genome database for the genu PlasmoDB is a genome database for the genus Plasmodium, a set of single-celled eukaryotic pathogens that cause human and animal diseases, including malaria. It brings together data provided by numerous laboratories worldwide (see the Data Sources page), and adds its own data analysis.<br /> PlasmoDB is a functional genomic database for Plasmodium spp. that provides a resource for data analysis and visualization in a gene-by-gene or genome-wide scale. PlasmoDB belongs to a family of genomic resources that are housed under the EuPathDB Bioinformatics Resource Center (BRC) umbrella. PlasmoDB contains numerous data types from several broad categories--annotated genomes, evidence of transcription, proteomics evidence, protein function evidence, population biology and evolution. Data in PlasmoDB can be queried by selecting the data of interest from a query grid or drop down menus. Various results can then be combined with each other on the query history page. Search results can be downloaded with associated functional data and registered users can store their query history for future retrieval or analysis. Organisms * Annotated genomes: Plasmodium falciparum, Plasmodium vivax, Plasmodium yoelii, Plasmodium berghei, Plasmodium chabaudi, Plasmodium knowlesi * Unannotated genomes: Plasmodium reichenowi, Plasmodium gallinaceum * Others: environmental isolate sequences from numerous species PlasmoDB provides programmatic access to its searches, via REST Web Services. ss to its searches, via REST Web Services.
ExampleImage PlasmoDB.PNG +
Grant Category:Contract HHSN266200400037C   +
Has default formThis property is a special property in this wiki. Resource  +
Has role Database +, Data analysis service +, Web service +
Id nif-0000-03314  +
Is part of Resource:EuPathDB - Eukaryotic Pathogen Database Resources +
Label Resource:ApiDB PlasmoDB  +
Modification dateThis property is a special property in this wiki. 3 July 2013 20:24:08  +
ModifiedDate 3 July 2013  +
PMID 18957442  +
Page has default formThis property is a special property in this wiki. Resource  +
SuperCategory Resource  +
Supporting Agency National Institute of Allergy and Infectious Diseases +
Synonym PlasmoDB Plasmodium Genomics Resource  +
Categories Resource
hide properties that link here 
Resource:GeneDB Pfalciparum + RelatedTo


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*Note: Neurolex imports many terms and their ids from existing community ontologies, e.g., the Gene Ontology. Neurolex, however, is a dynamic site and any content beyond the identifier should not be presumed to reflect the content or views of the source ontology. Users should consult with the authoritative source for each ontology for current information.