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Category:Resource:Ascidian Network for InSitu Expression and Embryological Data
Abbrev ANISEED  +
CurationStatus uncurated  +
DefiningCitation http://www.aniseed.cnrs.fr/  +
Definition Database of ascidian embryonic development Database of ascidian embryonic development at the level of the genome (cis-regulatory sequences, gene expression, protein annotation), of the cell (morphology, fate, induction, lineage) or of the whole embryo (anatomy, morphogenesis). Currently, four organism models are described in Aniseed: Ciona intestinalis, Ciona savignyi, Halocynthia roretzi and Phallusia mammillata.<br /> This version supports four sets of Ciona intestinalis transcript models: JGI v1.0, KyotoGrail 2005, KH and ENSEMBL, all functionally annotated, and grouped into Aniseedv3.0 gene models. Users can explore their expression profiles during normal or manipulated development, access validated cis-regulatory regions, get the molecular tools used to assay gene function, or all articles related to the function, or regulation of a given gene. Known transcriptional regulators and targets are listed for each gene, as are the gene regulatory networks acting in individual anatomical territories. <br /> ANISEED is a community tool, and the direct involvement of external contributors is important to optimize the quality of the submitted data. Virtual embryo: The 3D Virtual embryo is available to download in the download section of the website. ad in the download section of the website.
ExampleImage ANISEED.PNG +
Grant Category:QLK3-CT-2001-01890   +
Has default formThis property is a special property in this wiki. Resource  +
Has role Database +, Software resource +, Data repository +
Id nif-0000-10155  +
Is part of Centre National de la Recherche Scientifique +
Keywords Embryology +, Embryo +, Gene +, Genome +, Anatomy +, Cis-regulatory +, Development +, Morphogenesis +, Morphology +, Protein +, Molecular neuroanatomy resource +, Cis-regulatory sequence +, Gene expression +, Protein annotation +, Cell +, Expression profile +, Function +, Regulation +, BLAST +, Visualization +, Data analysis service +, Clone +
Label Resource:Ascidian Network for InSitu Expression and Embryological Data  +
Modification dateThis property is a special property in this wiki. 28 March 2014 18:45:14  +
ModifiedDate 28 March 2014  +
PMID 20647237  +
Page has default formThis property is a special property in this wiki. Resource  +
Species Ciona intestinalis +, Ciona savignyi +, Phallusia mammillata +, Halocynthia roretzi +
SuperCategory Resource  +
Supporting Agency Centre National de la Recherche Scientifique +, French Ministry of Higher Education and Research +, Marseille-Nice Genopôle +, ARC +, European Network +, EAC +, Association pour la Recherche sur le Cancer +, Science and Technology Foundation of Portugal +
Synonym Aniseed database  +
Categories Resource
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