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Category:Resource:Ascidian Network for InSitu Expression and Embryological Data
Abbrev ANISEED  +
CurationStatus uncurated  +
DefiningCitation http://www.aniseed.cnrs.fr/  +
Definition Database of ascidian embryonic development Database of ascidian embryonic development at the level of the genome (cis-regulatory sequences, gene expression, protein annotation), of the cell (morphology, fate, induction, lineage) or of the whole embryo (anatomy, morphogenesis). Currently, four organism models are described in Aniseed: Ciona intestinalis, Ciona savignyi, Halocynthia roretzi and Phallusia mammillata.<br /> This version supports four sets of Ciona intestinalis transcript models: JGI v1.0, KyotoGrail 2005, KH and ENSEMBL, all functionally annotated, and grouped into Aniseedv3.0 gene models. Users can explore their expression profiles during normal or manipulated development, access validated cis-regulatory regions, get the molecular tools used to assay gene function, or all articles related to the function, or regulation of a given gene. Known transcriptional regulators and targets are listed for each gene, as are the gene regulatory networks acting in individual anatomical territories. <br /> ANISEED is a community tool, and the direct involvement of external contributors is important to optimize the quality of the submitted data. Virtual embryo: The 3D Virtual embryo is available to download in the download section of the website. ad in the download section of the website.
ExampleImage ANISEED.PNG +
Grant Category:QLK3-CT-2001-01890   +
Has default formThis property is a special property in this wiki. Resource  +
Has role Database +, Software resource +, Data repository +
Id nif-0000-10155  +
Is part of French National Center for Scientific Research +
Keywords Embryology +, Embryo +, Gene +, Genome +, Anatomy +, Cis-regulatory +, Development +, Morphogenesis +, Morphology +, Protein +, Molecular neuroanatomy resource +, Cis-regulatory sequence +, Gene expression +, Protein annotation +, Cell +, Expression profile +, Function +, Regulation +, BLAST +, Visualization +, Data analysis service +, Clone +
Label Resource:Ascidian Network for InSitu Expression and Embryological Data  +
Modification dateThis property is a special property in this wiki. 25 July 2014 22:39:01  +
ModifiedDate 25 July 2014  +
OldURL http://crfb.univ-mrs.fr/aniseed/index.php  +
PMID 20647237  +
Page has default formThis property is a special property in this wiki. Resource  +
Species Ciona intestinalis +, Ciona savignyi +, Phallusia mammillata +, Halocynthia roretzi +
SuperCategory Resource  +
Supporting Agency French National Center for Scientific Research +, French Ministry of Higher Education and Research +, Marseille-Nice Genopôle +, ARC +, European Network +, EAC +, Association pour la Recherche sur le Cancer +, Science and Technology Foundation of Portugal +
Synonym Aniseed database  +
Categories Resource
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*Note: Neurolex imports many terms and their ids from existing community ontologies, e.g., the Gene Ontology. Neurolex, however, is a dynamic site and any content beyond the identifier should not be presumed to reflect the content or views of the source ontology. Users should consult with the authoritative source for each ontology for current information.