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Category:Resource:BioSample Database at EBI
Abbrev BioSD  +
Availability The community can contribute to this resource +
Comment Sample type: Cell line, etc.
CurationStatus curated  +
DefiningCitation http://www.ebi.ac.uk/biosamples/  +
Definition Database that aggregates sample informatio Database that aggregates sample information for reference samples (e.g. Coriell Cell lines) and samples for which data exist in one of the EBI's assay databases such as ArrayExpress, the European Nucleotide Archive or PRoteomics Identificates DatabasE. It provides links to assays for specific samples, and accepts direct submissions of samples. Physical samples may also be available for further study from suppliers. The goals of the BioSample Database include: (i) recording and linking of sample information consistently within EBI databases such as ENA, ArrayExpress and PRIDE; (ii) minimizing data entry efforts for EBI database submitters by enabling submitting sample descriptions once and referencing them later in data submissions to assay databases and (iii) supporting cross database queries by sample characteristics. The database includes a growing set of reference samples, such as cell lines, which are repeatedly used in experiments and can be easily referenced from any database by their accession numbers. Accession numbers for the reference samples will be exchanged with a similar database at NCBI. The samples in the database can be queried by their attributes, such as sample types, disease names or sample providers. A simple tab-delimited format facilitates submissions of sample information to the database, initially via email to biosamples (at) ebi.ac.uk. Current data sources: * European Nucleotide Archive (424,811 samples) * PRIDE (17,001 samples) * ArrayExpress (1,187,884 samples) * ENCODE cell lines (119 samples) * CORIELL cell lines (27,002 samples) * Thousand Genome (2,628 samples) * HapMap (1,417 samples) * IMSR (248,660 samples) * direct submissions (2,344 samples) ples) * direct submissions (2,344 samples)
ExampleImage BioSD.PNG +
Grant Category:HEALTH-F4-2010-241669   +, Category:HEALTH-F4-2007-201413   +
Has default formThis property is a special property in this wiki. Resource  +
Has role Database +, Biomaterial supply resource +, Cell repository +, Biospecimen repository +
Id nlx_143930  +
Is part of Resource:European Bioinformatics Institute +
Keywords Cell line +, Cell +, Nucleotide +, Sequencing +, Proteomics +, Peptide +, Protein +, Genomics +, Gene expression +, Biological sample +, Molecular +, Sequence +, Structure +, Topical portal +, Aggregator +, Gold standard +
Label Resource:BioSample Database at EBI  +
Modification dateThis property is a special property in this wiki. 30 July 2014 23:45:27  +
ModifiedDate 30 July 2014  +
PMID 22096232  +
Page has default formThis property is a special property in this wiki. Resource  +
PublicationLink http://nar.oxfordjournals.org/content/40/D1/D64.abstract?ijkey=374e1923695afc02d016814b186e42cd500c3cc5&keytype2=tf_ipsecsha  +
RelatedTo Resource:NCBI BioSample +, Resource:European Nucleotide Archive +, Resource:PRIDE +, Resource:ArrayExpress +, Resource:ENCODE: Encyclopedia of DNA Elements +, Resource:Coriell Institute for Medical Research +, Resource:1000 Genomes: A Deep Catalog of Human Genetic Variation +, Resource:International HapMap Project +, Resource:International Mouse Strain Resource +, Resource:OMICtools +
Related application Research  +
SuperCategory Resource  +
Supporting Agency Resource:European Molecular Biology Laboratory; Heidelberg; Germany +, European Commission +, (CAGEKID +, ENGAGE from FP7 program) +
Synonym BioSample Database at the EBI  +, BioSample Database  +, BioSD - BioSample Database  +, BioSD at EBI  +, BioSamples database  +, BioSamples Database at EBI  +, EBI BioSample Database  +, BioSamples  +
Xref Resource:BioSample Database at EBI +
Categories Resource
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