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From NeuroLex
| Abbrev
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Bioconductor +
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| Availability
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Open source - Free for academic use. +,
The community can contribute to this resource. +
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| Comment
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GO data updates: every three months (or more frequently) / org-id: bioconductor
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| CurationStatus
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curated +
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| DefiningCitation
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http://www.bioconductor.org/ +
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| Definition
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Open source, open development software pro … Open source, open development software project providing tools for the analysis and comprehension of high-throughput genomic data. It is based primarily on the R programming language. It has two releases each year, 610 software packages, and an active user community. Bioconductor is also available as an Amazon Machine Image (AMI).
There is also a development version, to which new features and packages are added prior to incorporation in the release. A large number of meta-data packages provide pathway, organism, microarray and other annotations.
Bioconductor packages the GO ontology into our semi-annual release, with software tools to: query; join with diverse additional gene, microarray, and sequence annotations; incorporate GO into annotation, differential expression, and gene set enrichment work flows; and visualize.
The broad goals of the Bioconductor project are:<br />
* To provide widespread access to a broad range of powerful statistical and graphical methods for the analysis of genomic data.<br />
* To facilitate the inclusion of biological metadata in the analysis of genomic data, e.g. literature data from PubMed, annotation data from LocusLink.<br />
* To provide a common software platform that enables the rapid development and deployment of extensible, scalable, and interoperable software.<br />
* To further scientific understanding by producing high-quality documentation and reproducible research.
* To train researchers on computational and statistical methods for the analysis of genomic data.<br />
Platform: Windows compatible, Mac OS X compatible, Linux compatible, Unix compatible patible, Linux compatible, Unix compatible
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| ExampleImage
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Bioconductor.PNG +
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| Grant
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Category:#1R33 HG002708 +
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| Has default formThis property is a special property in this wiki.
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Resource +
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| Has role
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Data analysis software +
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| Id
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nif-0000-10445 +
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| Is part of
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Resource:Fred Hutchinson Cancer Research Center +
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| Keywords
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Analysis +,
Biological +,
Development +,
Genomic +,
Graphical +,
Metadata +,
Microarray +,
Software resource +,
Statistical +,
Variant +,
Annotation +,
High throughput assay +,
Sequence data +,
Sequence +,
Flow +,
Gene +,
Term enrichment +,
Text mining +,
Genetic +,
Ontology or annotation browser +,
Ontology or annotation search engine +,
Ontology or annotation visualization +,
Database or data warehouse +,
Software library +,
Statistical analysis +,
Other analysis +,
Flexible integration of GO into statistical analysis and comprehension of high-throughput genetic data +,
Browser +,
Search engine +,
Visualization +,
High-throughput +,
Genetics +
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| Label
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Resource:Bioconductor +
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| Modification dateThis property is a special property in this wiki.
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12 April 2013 21:41:36 +
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| ModifiedDate
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12 April 2013 +
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| PMID
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15461798 +
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| Page has default formThis property is a special property in this wiki.
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Resource +
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| PublicationLink
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http://genomebiology.com/content/pdf/gb-2004-5-10-r80.pdf +
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| RelatedTo
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Resource:Gene Ontology Tools +,
Resource:GO +
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| SuperCategory
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Resource +
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| Supporting Agency
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National Institutes of Health +,
Resource:Catt Family Foundation +,
Resource:Dana-Farber Cancer Institute +
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| Synonym
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Biobonductor - Open Source Software for Bioinformatics +
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| Twitter
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Bioconductor +
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| Categories |
Resource
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