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Category:Resource:Bovine Gene Atlas
Abbrev BGA  +
CurationStatus uncurated  +
DefiningCitation  +
Definition A compendium of over 7.2 million unique 20 A compendium of over 7.2 million unique 20 base transcript tags profiled from 81 tissues acquired from the cow "L1 Dominette 01449" , her male fetus, her 255 day old heifer calf, and her father. The BGA tags were generated on Illumina's GA1 sequencing platform. L1D's genome (build: 3.1) was sequenced at the Baylor College of Medicine and Genome Canada sequenced EST and full-length transcripts from the same tissues used for the BGA. Tissues were chosen as a source of total RNA to minimize sequence differences between cDNA tags and genomic or expressed sequence and increase the probability of unequivocally mapping tags to build 3.1. The BGA is comprised of cardiovascular, digestive, endocrine, lymphatic, muscular, nervous system, reproductive and urinary tissues sampled from animals in the fetal, juvenile, and adult stages of development. This cover is a portal to view the tags positioned on the 3.1 build using GBrowse, and a new database schema for positional and functional queries. ema for positional and functional queries.
Grant Category:2006-35616-16648   +, Category:1265-31000-098D (BFGL)   +, Category:5434-31000-014-00D (LARRL)   +, Category:5438-31000-085-00D (USMARC)   +, Category:2008-34609-19318   +
Has default formThis property is a special property in this wiki. Resource  +
Has role Expression atlas +
Id nlx_43343  +
Is part of Mississippi State University; Mississippi; USA +
Keywords Gene expression +, Neuroanatomy +
Label Resource:Bovine Gene Atlas  +
Modification dateThis property is a special property in this wiki. 2 February 2015 04:41:36  +
ModifiedDate 2 February 2015  +
PMID 20961407  +
Page has default formThis property is a special property in this wiki. Resource  +
Species Bos taurus +
SuperCategory Resource  +
Supporting Agency Cooperative State Research Education and Extension +, Agricultural Research Service +, CSRESS +
Synonym Bovine Gene Atlas: An Extensive Compendium of Bovine Transcript Profiles  +
Categories Resource
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*Note: Neurolex imports many terms and their ids from existing community ontologies, e.g., the Gene Ontology. Neurolex, however, is a dynamic site and any content beyond the identifier should not be presumed to reflect the content or views of the source ontology. Users should consult with the authoritative source for each ontology for current information.